braincogs Goto Github PK
Name: BRAIN CoGS
Type: Organization
Location: Princeton, New Jersey
Blog: www.braincogs.org
Name: BRAIN CoGS
Type: Organization
Location: Princeton, New Jersey
Blog: www.braincogs.org
Contains functions to analyze behavioral and optogenetic inactivation data during the accumulating-towers, visually-guided and memory-guided tasks. Written by Lucas Pinto, [email protected], unless stated otherwise in the function header
A set of python tools for navigating, viewing and manipulating hierarchical brain atlases
Compilation of electrophysiology sorters supported in the U19 Ephys Pipeline
L-BFGS-B and other optimization implementation in pure C++11 using Eigen
Relational data pipelines for the science lab
DataJoint Element for Neuropixels analysis with Kilosort
DataJoint Element for multi-photon calcium imaging analysis with CaImAn and Suite2p
Analysis of hippocampal activity in the towers task
pyqt5 dependent applications for IBL sessions
Repository for Jenkins tutorial
Matlab-based software to control scanning-laser setups for optogenetic experiments. Written by Lucas Pinto, [email protected]
Pipeline for microscope management
WebGL-based viewer for volumetric data
Workshop material from DataJoint NeuroNex Workshop 2018
Contains functions to generate all figures in Pinto et al., 2019, Neuron. Written by Lucas Pinto, [email protected]
Slurm/python scripts for converting light sheet data to precomputed format for Neuroglancer visualization
Make precomputed annotation layers for browsing in Neuroglancer
An image processing package for removing streaks from SPIM images
GUI to register recordings in the automatic pipeline
Matlab file exchange functions for SAK imaging pipeline
c++ cubic spline library
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