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app-recobundles icon app-recobundles

This application takes in a full tractography (Multishell Tractography w/CSA or Multishell Tractography w/ SHORE) and the output from the White Matter Segmentation and uses the Recobundles algorithm to find the corresponding white matter segmentation in the full tractogram.

dipy icon dipy

Diffusion MR Imaging in Python

encode icon encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

glue icon glue

Scripts for AD projects.

life-1 icon life-1

MatLab routines for evaluating the quality of white-matter connectomes generated using diffusion-weighted imaging.

lifebid2sda icon lifebid2sda

Repository to keep track of lifebid projects on DC2 using the archive/restore method

mba icon mba

Matlab Brain Anatomy. This is a set of routines for displaying and manipulating brain anatomy using MatLab.

mrtools icon mrtools

mrTools - matlab based tools for fMRI

o3d icon o3d

Open Derivatives Diffusion Data

o3d-code icon o3d-code

Open Derivatives Diffusion Data scripts used to generate and organize the data

pestillilab_projects icon pestillilab_projects

This repository contains code beign developed for a majority of the projects being undertaken by the Pestilli Research Group.

vistasoft icon vistasoft

DEPRECATED: brain-life no longer uses this - we use vistalab/vistasoft

wmp icon wmp

White matter plasticity

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