bradduthie Goto Github PK

blog

Blog

bradduthie.github.io

Personal website

chapter2model

c++ code for an multi-species predator-prey IBM

comrad

R package to simulate a COMpetitive RADiation, based on the eco-evolutionary model of Pontarp et al. (2012)

correlation_and_regression

A lecture on correlation and regression

duthie_and_falcy_2013

C code to run individual-based model in Duthie and Falcy (2013)

duthie_and_nason_2016

These file recreates the entire analysis of Duthie and Nason (2016) in R, including analysis of the appendix, using the file `FpetWasp_Data.csv'. It also recreates all figures used in the manuscript. More detailed explanations are included in the comments of the R file.

duthie_and_reid_2015_figs

R code underlying Figures 2 and 4 for Duthie and Reid (2015)

duthie_et_al_2014

C code to run individual-based model in Duthie et al. (2014)

duthie_et_al_2015

Trade-offs and coexistence in fluctuating environments: evidence for a key dispersal-fecundity trade-off in five nonpollinating fig wasps (complete analysis)

ecoedu

An educational tool for understanding ecological models of population dynamics

emma-bush.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

gamesga

Finds optimal strategies for sequential symmetric games using a genetic algorithm

gmse

An R package for simulating Generalised Management Strategy Evaluation

goosegmse

GooseGMSE

inbreeding

Population genetic model of polygynous biparental inbreeding with no polyandry

inbreeding_care

Manuscript concerning inbreeding and parental investment, ``Inbreeding parents should invest more resources in fewer offspring''. Includes all history of model development.

litreview

Annoted readings for literature review

modgamesms

msc-big-data-dissertation-

Neural network development for social-ecological modelling of conservation conflict

msetools

A collection of functions usuful when constructing MSE models

multiple_regression

A lecture on multiple regression

pisaura

polyinbreed

Individual-based model for the evolution of polyandry and inbreeding

pre_post_cop

Manuscript concerning evolution of pre and postcopulatory inbreeding adjustment

randomisation

Randomisation lectures

randommatrixstability

R package associated with paper "Component response rate variation underlies the stability of highly complex finite systems" (Duthie, AB. 2020. Sci. Rep. 10:8296, https://www.nature.com/articles/s41598-020-64401-w). This repository contains all manuscript text and supplemental information, and all code for recreating analyses.

resevol

BBSRC FAPESP Newton Funded Project to model how the spatial scale of heterogeneity in fungal isolate application and crop plant cultivation affects variation in the selection landscape for biopesticide resistance.

sciu4t4

Statistical techniques workbook

statistical_techniques

A Workbook in Statistical Techniques for Biological and Environmental Sciences