bpaniagua Goto Github PK

autoscoperm.slicer.org

Source code to the site describing the SlicerAutoscoperM extension. This site is published at autoscoperm.slicer.org and maintained by @BrownBiomechanics and @Kitware.

bonetextureextension

Slicer extensions for computing feature maps of N-Dimensional images using well-known texture analysis methods.

bonetexturesnapshots

bpaniagua.github.io

bppWeb

customslicergenerator

Tool to help deploy custom applications

diagnosticindex

Tool to classify 3D surface models based in Statistical Shape Models of pathology. This work has been funded by the National Institute of Dental Research (NIDCR) and the National Institute for Biomedical Imaging and Bioengineering (NIBIB) grant R01 DE024450, “Quantification of 3D Bony Changes in Temporomandibular Joint Osteoarthritis”.

diagnosticindexcli

diagnosticindexextension

extensionsindex

Slicer extensions index

freelancer-theme

Jekyll theme based on Freelancer Start Bootstrap theme

groupanalysis

groups

Group wise registration for 3d-models

imagenoise

Computes the Signal to Noise Ratio in MRI

itk

Insight Segmentation and Registration Toolkit -- Mirror

mfsda_python

Multivariate Functional Shape Data Analysis in Python (MFSDA_Python) is a Python based package for statistical shape analysis. A multivariate varying coefficient model is introduced to build the association between the multivariate shape measurements and demographic information and other clinical, biological variables. Statistical inference, i.e., hypothesis testing, is also included in this package, which can be used in investigating whether some covariates of interest are significantly associated with the shape information. The hypothesis testing results are further used in clustering based analysis, i.e., significant suregion detection. This MFSDA package is developed by Chao Huang and Hongtu Zhu from the BIG-S2 lab.

pickandpaintextension

qt-easy-build

Scripts allowing to easily build Qt with OpenSSL support on Linux, MacOSX or Windows

registrationbasedcorrespondence

rodentthickness

RodentThickness is an automatic cortical thickness measurement tool for rat brains.

slicer

Multi-platform, free open source software for visualization and image computing.

slicer-wiki-scripts

This repository is a collection of scripts useful to update the Slicer wiki

slicer.org

Prototype of a potential replacement for the exisiting landing page

slicerdmri.github.io

SlicerDMRI organization website repository

slicersalt

An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging studies. This software called Slicer Shape AnaLysis Toolbox (SlicerSALT), will enhance the intuitiveness and ease of use for such studies, as well as allow researchers to find shape changes with higher statistical power. Altogether this constitutes a crucial resource for the imaging field that will enable many and important new findings in biomedical imaging studies.

slicersurfacetoolbox

Supports various cleanup and optimization processes on surface models

slicerverse

spharm-pdm

Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.

toothfracture

Simulation of a fracture in a tooth

ucdtovtureader