boyuezhong Goto Github PK

2018---2019-equipe-5

Downstream part of the collaborative Meet-U project, for protein structure prediction.

3dcnn_mqa

Deep convolutional networks for fold recognition

aenet

Atomic interaction potentials based on artificial neural networks

angularqa

AngularQA is a single-model quality assessment tool to evaluate quality of predicted protein structures. It is built on a new representation that converts raw atom information into a series of carbon-alpha (Cα) atoms with side-chain information, defined by their dihedral angles and bond lengths to the prior residue. An LSTM network is used to predict the quality by treating each amino acid as a time-step and consider the final value returned by the LSTM cells.

askcos

attention-is-all-you-need-pytorch

A PyTorch implementation of the Transformer model in "Attention is All You Need".

attention-module

Official PyTorch code for "BAM: Bottleneck Attention Module (BMVC2018)" and "CBAM: Convolutional Block Attention Module (ECCV2018)"

attentivefp

attngan

Pytorch implementation for reproducing AttnGAN results in the paper AttnGAN: Fine-Grained Text to Image Generation with Attentional Generative Adversarial Networks by Tao Xu, Pengchuan Zhang, Qiuyuan Huang, Han Zhang, Zhe Gan, Xiaolei Huang, Xiaodong He.

attngan-1

augmented-gcn

awesome-community-detection

A curated list of community detection research papers with implementations.

awesome-pytorch-list

A comprehensive list of pytorch related content on github,such as different models,implementations,helper libraries,tutorials etc.

awesome-semantic-segmentation

:metal: awesome-semantic-segmentation

awsemmd

Associative memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code

bert-utils

一行代码使用BERT生成句向量，BERT做文本分类、文本相似度计算

ccmpred

Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.

chainer-chemistry

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

chemprop

Chemical Property Prediction with Graph Convolutional Networks

cmms-tfm-project

Repository for the Template-free Modelling project of CMP_SC 8170 - Computational Modelling of Molecular Structures

colvars

Collective variables module for molecular simulation and analysis programs

danet

Dual Attention Network for Scene Segmentation (CVPR2019)

deep-learning-for-contact_map_v2

Prediction of protein contact map

deep2read

https://qdata.github.io/deep2Read/ This website includes a (growing) list of papers and lectures we read about deep learning and related.

deepcon

DEEPCON: Protein Contact Prediction using Dilated Convolutional Neural Networks with Dropout

deepcov

Fully convolutional neural networks for protein residue-residue contact prediction

deepcovqa

Deep convolutional neural networks for protein model quality assessment

deepcseqsite

Protein-ligand binding sites prediction toolkits

deepdrug3d

deepfold

Learning structural motif representations for efficient protein structure search