Comments (2)
Hello Boxiang,
I think I figured out the error from my previous comment by reducing the length of my data frames. However, I am now encountering the following problem:
Error in locuscompare(in_fn1 = leafcutter_snps, in_fn2 = gtex_CAD_snps, :
There must be one and only one chromosome.
I'm pretty sure I'm using snps from only one chromosome since the data frames I provide are from one locus only. Do you you have any suggestions as to what might be going on? Thanks.
Nelson Barrientos
from locuscomparer.
Hi @nbbarrientos or @boxiangliu, were you ever able to solve the "There must be one and only one chromosome."
issue? I encountered it recently as well and my input files also use SNPs from only one chromosome. My understanding is locuscompare
calls get_position
which calls positions from the MySQL server. Thanks for any help in advance.
from locuscomparer.
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from locuscomparer.