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16s-mini-project

This is a workflow for 16S rRNA analysis.

amr_patterns_and_trends

amrtime

Tool to predict the presence of antimicrobial resistance in clinical metagenomes

awesome-remote-job

A curated list of awesome remote jobs and resources. Inspired by https://github.com/vinta/awesome-python

bibtex-jupyter

https://alamgirh.github.io/bibtex-jupyter/

biohack_ml_ancestry

biological_databases_api

An introduction to Biological Databases and how the API can be used to access data

cnn-nlp_twitter_sentiments_analysis

In this project we explore how CNN can be used to classify twitter sentiments as either positive,negative or neutral

cnvnator

a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads

coffee_leaf_disease_detection_cnn

This repository is aimed at using published Arabica coffee leaf images dataset for coffee leaf disease detection

delfi_scripts

dsnd-data-science-blog-post

Post about the Data Science Process for machine learning model development according CRISP-DM.

esoup

A wrapper around NCBI's Entrez utilities

flags

getting-started-with-open-source

hierarchicalml

Hierarchical ML Package with example application for Salmonella Enteritidis

introductions

An Introductory repo for maintainers, collaborators and the bioinformatics community at large

introductiontogithub

Introducing github

introductorygit

introgithub

iris_dataset

This project is for iris dataset classification using linear regression.

microbial_data_mining

This project involves reproduceible research on data mining of microial information from proteomics data

microbiome

Microbiome repository

mini-projects-2022

For the Residential Training Mini-projects

ml_sarscov2

Machine Learning Approach for Predicting CoVID-19 Cases and Classifying SARS-CoV-2 Variants

myfirstfork

Fork this repository and make changes to the README

phylogenetic-tree-study

Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

plant_multiome

Comparative Analysis of Plant and Animal Multiomic Data for the Detection of Hidden Features

prisma-examples

🚀 Ready-to-run Prisma example projects

python4bioinformaticsv2

Updated materials for MSc Bioinformatics for Pwani University