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Benedikt Obermayer's Projects

cellxgene_vip icon cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

gbbs icon gbbs

GBBS: Graph Based Benchmark Suite

mgatk icon mgatk

mgatk: mitochondrial genome analysis toolkit

mirca icon mirca

Motif-Informed Read Coverage Analysis

pynndescentsc icon pynndescentsc

A Python nearest neighbor descent for approximate nearest neighbors

rpftools icon rpftools

scripts for analysis of ribosome profiling data

sparsecluster icon sparsecluster

hierarchical agglomerative clustering for large and sparse datasets using pynndescent and gbbs SeqHAC

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