Comments (2)
jwijffels
commented on September 28, 2024
image.CornerDetectionHarris
Check Details
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'image.CornerDetectionHarris-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: image_harris
> ### Title: Find Corners using Harris Corner Detection
> ### Aliases: image_harris
>
> ### ** Examples
>
> library(magick)
Linking to ImageMagick 6.9.10.23
Enabled features: fontconfig, freetype, fftw, lcms, pango, webp, x11
Disabled features: cairo, ghostscript, rsvg
Using 3 threads
> path <- system.file(package = "image.CornerDetectionHarris",
+ "extdata", "building.png")
> x <- image_read(path)
> pts <- image_harris(x)
double free or corruption (!prev)
Aborted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘image.CornerDetectionHarris-Ex.R’ failed
The error most likely occurred in:
> ### Name: image_harris
> ### Title: Find Corners using Harris Corner Detection
> ### Aliases: image_harris
>
> ### ** Examples
>
> library(magick)
Linking to ImageMagick 7.0.10.18
Enabled features: cairo, fontconfig, freetype, fftw, ghostscript, lcms, pango, rsvg, webp, x11
Disabled features:
Using 24 threads
> path <- system.file(package = "image.CornerDetectionHarris",
+ "extdata", "building.png")
> x <- image_read(path)
> pts <- image_harris(x)
OMP: Warning #96: Cannot form a team with 6 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
double free or corruption (!prev)
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.0
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-release-macos-x86_64
- noOMP
* installing *source* package ‘image.CornerDetectionHarris’ ...
** package ‘image.CornerDetectionHarris’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-noOMP/image.CornerDetectionHarris/src'
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c RcppExports.cpp -o RcppExports.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gaussian.cpp -o gaussian.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c gradient.cpp -o gradient.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c harris.cpp -o harris.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c interpolation.cpp -o interpolation.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c rcpp_harris.cpp -o rcpp_harris.o
/usr/local/clang-noOMP/bin/clang++ -std=gnu++11 -I"/data/gannet/ripley/R/R-clang-noOMP/include" -DNDEBUG -I'/data/gannet/ripley/R/test-clang/Rcpp/include' -isystem /usr/local/clang/include -fpic -g -O3 -Wall -pedantic -frtti -c zoom.cpp -o zoom.o
rcpp_harris.cpp:8:10: fatal error: 'omp.h' file not found
#include <omp.h>
^~~~~~~
1 error generated.
make[1]: *** [/data/gannet/ripley/R/R-clang-noOMP/etc/Makeconf:174: rcpp_harris.o] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-noOMP/image.CornerDetectionHarris/src'
ERROR: compilation failed for package ‘image.CornerDetectionHarris’
* removing ‘/data/gannet/ripley/R/packages/tests-noOMP/image.CornerDetectionHarris.Rcheck/image.CornerDetectionHarris’
- gcc-ASAN
* using log directory ‘/data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris.Rcheck’
* using R Under development (unstable) (2020-07-27 r78912)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘image.CornerDetectionHarris/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘image.CornerDetectionHarris’ version ‘0.1.0’
* package encoding: UTF-8
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package ‘image.CornerDetectionHarris’ can be installed ... [50s/28s] OK
* checking package directory ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking compiled code ... OK
* checking examples ... ERROR
Running examples in ‘image.CornerDetectionHarris-Ex.R’ failed
The error most likely occurred in:
> ### Name: image_harris
> ### Title: Find Corners using Harris Corner Detection
> ### Aliases: image_harris
>
> ### ** Examples
>
> library(magick)
Linking to ImageMagick 6.9.11.22
Enabled features: cairo, fontconfig, freetype, fftw, ghostscript, lcms, pango, rsvg, webp, x11
Disabled features:
Using 24 threads
> path <- system.file(package = "image.CornerDetectionHarris",
+ "extdata", "building.png")
> x <- image_read(path)
> pts <- image_harris(x)
=================================================================
==971254==ERROR: AddressSanitizer: heap-buffer-overflow on address 0x6210003ffc00 at pc 0x7f05f4468640 bp 0x7ffdb3732630 sp 0x7ffdb3732620
WRITE of size 8 at 0x6210003ffc00 thread T0
#0 0x7f05f446863f in discrete_gaussian(float*, float*, int, int, float, int) [clone ._omp_fn.1] /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/gaussian.cpp:339
#1 0x7f0605702f45 in GOMP_parallel (/lib64/libgomp.so.1+0x12f45)
#2 0x7f05f446c183 in discrete_gaussian(float*, float*, int, int, float, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/gaussian.cpp:327
#3 0x7f05f446c9ed in gaussian(float*, float*, int, int, float, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/gaussian.cpp:402
#4 0x7f05f448e4b6 in harris(float*, std::vector<harris_corner, std::allocator<harris_corner> >&, int, int, int, float, float, float, float, int, int, int, int, int, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/harris.cpp:499
#5 0x7f05f448ea05 in harris_scale(float*, std::vector<harris_corner, std::allocator<harris_corner> >&, int, int, int, int, float, float, float, float, int, int, int, int, int, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/harris.cpp:565
#6 0x7f05f44a24d6 in detect_corners(Rcpp::Vector<14, Rcpp::PreserveStorage>, int, int, float, float, float, float, int, int, int, int, int, int, int, int, int) /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/rcpp_harris.cpp:35
#7 0x7f05f44228f2 in _image_CornerDetectionHarris_detect_corners /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/RcppExports.cpp:30
#8 0x57b565 in R_doDotCall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:669
#9 0x58527c in do_dotcall /data/gannet/ripley/R/svn/R-devel/src/main/dotcode.c:1281
#10 0x62584b in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7114
#11 0x66d567 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723
#12 0x672834 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888
#13 0x674ce4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814
#14 0x643fae in bcEval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:7082
#15 0x66d567 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:723
#16 0x672834 in R_execClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1888
#17 0x674ce4 in Rf_applyClosure /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:1814
#18 0x66de2f in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:846
#19 0x67a689 in do_set /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:2960
#20 0x66e258 in Rf_eval /data/gannet/ripley/R/svn/R-devel/src/main/eval.c:798
#21 0x6ecadd in Rf_ReplIteration /data/gannet/ripley/R/svn/R-devel/src/main/main.c:264
#22 0x6ed128 in R_ReplConsole /data/gannet/ripley/R/svn/R-devel/src/main/main.c:314
#23 0x6ed274 in run_Rmainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1113
#24 0x6ed2c2 in Rf_mainloop /data/gannet/ripley/R/svn/R-devel/src/main/main.c:1120
#25 0x41b378 in main /data/gannet/ripley/R/svn/R-devel/src/main/Rmain.c:29
#26 0x7f0604bbe041 in __libc_start_main (/lib64/libc.so.6+0x27041)
#27 0x41daed in _start (/data/gannet/ripley/R/gcc-SAN/bin/exec/R+0x41daed)
0x6210003ffc00 is located 0 bytes to the right of 4864-byte region [0x6210003fe900,0x6210003ffc00)
allocated by thread T0 here:
#0 0x7f06062b41d7 in operator new[](unsigned long) (/lib64/libasan.so.6+0xb21d7)
#1 0x7f05f4466dd2 in discrete_gaussian(float*, float*, int, int, float, int) [clone ._omp_fn.1] /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/gaussian.cpp:331
#2 0x7f0605702f45 in GOMP_parallel (/lib64/libgomp.so.1+0x12f45)
#3 0x7f05f0ddf7ff (<unknown module>)
SUMMARY: AddressSanitizer: heap-buffer-overflow /data/gannet/ripley/R/packages/tests-gcc-SAN/image.CornerDetectionHarris/src/gaussian.cpp:339 in discrete_gaussian(float*, float*, int, int, float, int) [clone ._omp_fn.1]
Shadow bytes around the buggy address:
0x0c4280077f30: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
0x0c4280077f40: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
0x0c4280077f50: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
0x0c4280077f60: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
0x0c4280077f70: 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
=>0x0c4280077f80:[fa]fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
0x0c4280077f90: fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa fa
0x0c4280077fa0: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
0x0c4280077fb0: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
0x0c4280077fc0: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
0x0c4280077fd0: fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd fd
Shadow byte legend (one shadow byte represents 8 application bytes):
Addressable: 00
Partially addressable: 01 02 03 04 05 06 07
Heap left redzone: fa
Freed heap region: fd
Stack left redzone: f1
Stack mid redzone: f2
Stack right redzone: f3
Stack after return: f5
Stack use after scope: f8
Global redzone: f9
Global init order: f6
Poisoned by user: f7
Container overflow: fc
Array cookie: ac
Intra object redzone: bb
ASan internal: fe
Left alloca redzone: ca
Right alloca redzone: cb
Shadow gap: cc
==971254==ABORTING
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR
Message from CRAN:
image.CornerDetectionHarris assumes omp.h unconditionally: see 'Writing R Extensions'.
from image.
jwijffels
commented on September 28, 2024
Fixed
from image.
Related Issues (20)
- build notes
- Make wrapper around pretrained CNN https://github.com/ShiqiYu/libfacedetection
- image.libfacedetection fails with some images HOT 4
- implement densecrf
- Print output bounding boxes and labels from image_darknet_detect
- notes to myself
- Object recognition: apply *h5 cnn model to find an specific handwritten digit HOT 1
- [image.darknet] output error: file.exists(model) is not TRUE HOT 10
- Crash R session HOT 2
- add DBoW2 HOT 2
- image_darknet_detect: "file" from memory object? HOT 1
- Extract lines from image_contour_detector HOT 7
- R crash when `union = T` in `image_line_segment_detector()` HOT 19
- Compilation error in image.darknet package
- installation error HOT 2
- namelist error on R HOT 4
- Session Crash HOT 9
- Line Segment Detector pixel matrix is 0 when union = T HOT 1
- image_surf only returns one non-zero dimension HOT 2
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from image.