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2016 icon 2016

Course material for BIO 260 and CSCI E-107 in Spring 2016

6.041 icon 6.041

Notes I've taken for MIT's 6.041 (Probabilistic Systems Analysis & Applied Probability), plus course bible material.

annocript icon annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.

apue_notes icon apue_notes

《UNIX环境高级编程》中文第三版笔记

assemblyline icon assemblyline

Automatically exported from code.google.com/p/assemblyline

awesome-single-cell icon awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

biocode icon biocode

Bioinformatics code libraries and scripts

brainmap icon brainmap

Mouse lncRNA Brain Map Project Data and Analysis

cgat icon cgat

CGAT - Computational Genomics Analysis Tools

chimerascan icon chimerascan

Automatically exported from code.google.com/p/chimerascan

chip-seq icon chip-seq

Useful scripts for ChIP-seq data analysis

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