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biomarker

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

cluster_diffex2018

scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers

cppnotebook

A notebook of implementation of the most common algorithms of CLRS book

cpython

The Python programming language

ctdna

Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding

dask

Minimal task scheduling abstraction

epicc

ervmap

ERVmap is one part curated database of human proviral ERV loci and one part a stringent algorithm to determine which ERVs are transcribed in their RNA seq data.

glassofast2

parallel implementation of graphical Lasso with Cholesky decomposition for estimating the inverse of the covariance matrix.

patchdca

plmdca

rrt

rrt3

rrt3-master

sc_read_kallisto_wrapper

wrapper for single cell transcriptomics pipeline with kallisto

scrna-seq-tcc-prep

Preprocessing of single-cell RNA-Seq data for input to kallisto

seqmaker.jl

(No maintenance) Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated

single-cell-3prime-paper

svtools

Tools for processing and analyzing structural variants.

tensorflow

Computation using data flow graphs for scalable machine learning

tensorflow-examples

TensorFlow Tutorial and Examples for Beginners with Latest APIs

umap

Uniform Manifold Approximation and Projection

umb-thesis-template

A Latex template for the UMB Masters Thesis

vision

A high-throughput and unbiased module for interpreting scRNA-seq data.