biomedicalinformaticsgroup Goto Github PK

biomedicalinformaticsgroup.github.io

Biomedical Informatics Group @Informatics, Edinburgh University

bionlp_resources

Repository where we can keep scripts related to other projects

cadmus

A full-text article retrieval pipeline for biomedical literature.

clustercons

Merged consensus clustering to assess and improve class discovery with microarray data

ddp2neo4j

developmental disorders phenotype

gene2phenotype

General repository for gene2phenotype oriented code

meetings

collections of links, notes and materials associated with our joint Bioinformatics meetings

mirnatap

mirnatap.db

mogdx

mogdx-ppmi

oa_pmc_extr

This repository automatically requests and extracts Full Text from Open Access PMC.

ontosuite-miner

An NLP pipeline for annotating ontologies from biomedical corpora

parallelpymetamap

This code is to run MetaMap in parallel using Python.

piquant

A pipeline to assess the quantification of transcripts

pm_abs_extr

This repository automatically requests and extracts abstract from PubMed.

ppi_rdf

rb_vs_ode_model_of_darpp-32

Repository storing molecular rule-based models in Kappa language and Python-based figures published as the BioRxiv preprint: https://www.biorxiv.org/content/10.1101/2022.03.26.485918v1

sargasso

Sargasso disambiguates mixed-species high-throughput sequencing data.

sfariexpression

Code repository for SFARI Genes and where to find them; classification modelling to identify genes associated with Autism Spectrum Disorder from RNA-seq data

statbio.github.io

targetpredictor

project1

targetpredictorupdater

toponto

topOnto - An R package for generically enabled ontology enrichment analysis

toponto.hdo.db

ontology package for human disease ontology