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ag-grid-docs

alpakka

Fork of Alpakka for bug fixes and other contributions. Refer questions to Ben Piper.

api-standards

azimuth

Python 3 version of https://github.com/MicrosoftResearch/Azimuth for use by Geneious Prime

azimuth2

Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

barcode-validator

A tool for validating sequence data for a barcode record before submission to GenBank

biojs-io-newick

Newick Parser in JS - parses newick strings into JSON and JSON into newick

biomatters-dev-tools

Contains the Biomatters developer tools. These tools are used by Biomatters to increase productivity during the development process. WARNING: May contain traces of awesome.

bitbucket-awesomeizer

Bitbucket Awesomizer makes your bitbucket experience awesome. It enables toggling of comment visibility when reviewing bitbucket pull requests.

elasticsearch

Free and Open, Distributed, RESTful Search Engine

elasticsearch-hadoop

Quick and dirty fork for Spark 2.4.x and Scala 2.12 support. Refer questions to Ben Piper.

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

geneious-coiledcoils

Compare your sequence to a database of known parallel two-stranded coiled-coils and derive a similarity score. By comparing this score to the distribution of scores in globular and coiled-coil proteins, you can then calculate the probability that the sequence will adopt a coiled-coil conformation.

geneious-complementorreverseonly

This plugin adds two operations to Geneious, one to reverse a DNA sequence (without complementing) and one to complement a DNA sequence (without reversing)

geneious-eupathdb

Provides services to search for genes in all of the EuPathDB databases. EuPathDB (formerly ApiDB) is an integrated database covering the eukaryotic pathogens in many genera.

geneious-example-lims-connector

An example plugin for connecting Geneious Prime to a LIMS system such that sequences can be submitted and retrieved

geneious-gotodocuments

Enter a list of unique IDs (URNs) for documents in your Geneious database to select them. Useful if you would like to store a reference to Geneious documents in another program. This works with documents stored in a Shared Database and the IDs do not change when documents are moved between folders or edited.

geneious-mira

The MIRA (Mimicking Intelligent Read Assembly) genome fragment assembler is great for ‘tricky’ projects with high numbers of repeats and it can handle hybrid data. MIRA is used for tasks such as mutation detection in different cell types, similarity analysis of transcripts between organisms, and pristine assembly of sequences from various sources for oligo design in clinical microarray experiments. It works best on sequences with up to 100-150 megabases or 20-40 million reads.

geneious-species-delimitation

The Species Delimitation Plugin an exploratory tool that allows you to assess putative species in phylogenetic trees. The plugin summarises measures of phylogenetic support and diagnosability of species defined as user-selected collections of taxa on user-supplied trees. Plugin by Brad Masters, Vicky Fan and Howard Ross.

genetic-constructor

Genetic Constructor

intellicomment

No more alt-tabbing between Bitbucket and your IDE! Review pull requests and comment on them from inside the Jetbrains IDE family (IntelliJ, Webstorm etc). IntelliComment takes the most recent pull request associated with a git branch and downloads the associated comments, presenting them in a side panel. Users can reply and post their own comments from inside their favourite Jetbrains IDE. The IntelliComment plugin was developed inBiomatters as part of a 24 hour evolab coding challenge.

jira-board-column-collapser

Collapses empty columns on boards in Jira

material

Material design for Angular

material-community-components

:panda_face: Angular Material Components created from the community

modhmm

Fork of abandoned https://sourceforge.net/projects/modhmm/

play-swagger

Swagger spec generator for play framework