Annotate associations with Wikidata property URIs about biolink-model HOT 6 CLOSED

I don't really understand how the associations are described

Under Slots (line 56) you have

  - name: in taxon
    domain: thing with taxon
    range: organism taxon
    description: >-
      connects a thing to a class representing a taxon
    mappings:
      - "RO:0002162"

line 1342:

  - name: gene to gene product relationship
    is_a: sequence feature relationship
    defining_slots:
      - subject
      - object
    description: >-
      A gene is transcribed and potentially translated to a gene product
    slot_usage:
      - name: subject
        range: gene
      - name: object
        range: gene product
      - name: relation
        subproperty_of: RO:0002205

Why is one mapped to RO and one is a subproperty? They look to be defined the same as in RO (a subject that is a gene -> transcribed to -> an object that is a gene product)

More importantly, how should I map to Wikidata (https://www.wikidata.org/wiki/Property:P688) ?

@cmungall

from biolink-model.

Just as a first pass focus on the core semantic types (e.g gene, disease)

from biolink-model.

Another question: How to handle cases where wikidata uses qualifiers to define the relationship. For example "physically interacts with", with the qualifiers: "As" -> "inhibitor"

from biolink-model.

"physically interacts with", with the qualifiers: "As" -> "inhibitor":
A is an inhibitor of B. B is an object inhibited by A?

from biolink-model.

Can this be closed?

from biolink-model.

Yes

from biolink-model.