Comments (6)
nlharris
commented on May 29, 2024
Is this now resolved?
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deepakunni3
commented on May 29, 2024
Not yet. This is still an open ticket. Needs a bit of discussion before we can close this ticket.
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ehinderer
commented on May 29, 2024
I was going to recommend looking into the HVGS recommendations, but I see Chris already mentioned it above. https://varnomen.hgvs.org/recommendations/general/.
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sierra-moxon
commented on May 29, 2024
@sabrinatoro @mbrush - shall we get together to address variant modeling in the biolink-model?
From a translator POV, keeping variation modeling simple has been requested. But in general, Monarch might need a more detailed approach (ie: in terms of bringing in Alliance data)
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sabrinatoro
commented on May 29, 2024
@sierra-moxon I would be happy to!
Let me know when to meet!
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sierra-moxon
commented on May 29, 2024
@mbrush, @kevinschaper, @kshefchek - Is this a priority for monarch? Shall we get together and hammer out a plan of action?
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Related Issues (20)
- biolink prefix in biolink-model.yaml returns 404
- Hazardous or Poisonous Substance (T131) mapped incorrectly to SmallMolecule
- Add a biolink:CommonDataElementBundle to provide an ordered list of biolink:CommonDataElement
- Incorrect mapping? skos:relatedMatch HOT 1
- SEMMED mappings to related to
- FMA identifiers don't resolve HOT 1
- Importing biolink raises ModuleNotFoundError HOT 1
- Inverses of mixin predicates don't establish an is_a path to a "root" mixin
- Obsolete Bacterium, or place it correctly
- Make the hierarchy is-a complete
- `biolink` base namespace does not redirect correctly? HOT 1
- Two discrepencies in `OMIM` prefix
- A URL from Reactome database HOT 11
- Move prefix map to src
- Prediction Qualifiers HOT 2
- Generated Python/Pydantic Models as Package? HOT 1
- Pathway `preceded_by`/`followed_by` HOT 2
- Sequence Motif PWMs
- What is the Prefix for microRNA?
- It seems impossible to instantiate GeneToGoTermAssociation objects using the python classes
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