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biostructuraldatascience

About me

Welcome to my homepage. I am a biomedical scientist specialised in structural biology and interested in the interplay between evolutionary processes and protein structure and function. Details of my publications can be found on my ORCID page, my NCBI-NLM bibliography and my Google Scholar page.

Programs, scripts and code snippets

Here you will find an assortment of small programs and helper scripts that I've written over the years for processing biological sequence, structural and image data. This is intended primarily as an effort to introduce some kind of curation to my collection, but my hope is that some of the code or the ideas underlying it will find its way into other projects. Most of the code is Python or Perl, some in C and C++, with a smattering of other languages.

Standalone programs

Plug-ins

Scripts

Useful commands from the shell

Video encoding

biojames's Projects

parmed icon parmed

Parameter/topology editor and molecular simulator

veusz icon veusz

Veusz scientific plotting application

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