Comments (3)
omarkr8
commented on August 10, 2024
tried again with the Identity test fa (keratin_small), and it worked.
so something about the test fasta suggested for the mesh tutorial wasnt compatible with my setup?
will try with my own data. perhaps it was data size?
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hani-girgis
commented on August 10, 2024
Hi.
To make sure I understand the issue, you cannot cluster 97_shuffled.fa using MeShClust v3.0, correct?
Best
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omarkr8
commented on August 10, 2024
correct.
I was able to run it using the keratin file, and I am able to run on my own data.
but when attempting cluster_97, it kills the process as above
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Related Issues (20)
- Identity on very large data HOT 10
- A sequence is too short HOT 1
- kmer-db HOT 1
- How to get MeShClust v3.0.0 HOT 3
- Clustering MAGs to nrMAGs HOT 1
- Floating point exception (core dumped) HOT 1
- Runtime for Large Dataset (1.3M seqs) HOT 1
- Turn off warning?
- Floating point exception (core dumped)
- bioconda recipe for meshclust3 HOT 2
- Identity shows the highest value for very different contigs length
- Any info for default threshold and mininum read sequence length for meshclust? HOT 1
- Segmentation fault HOT 2
- Clustering long-read 18S amplicons HOT 3
- Bioconda version
- Protein sequences
- Negative threshold
- meshclust not in latest release?
- MeShClust terminates due to mean1 is zero
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