bioinformaticslabatmun Goto Github PK
Name: Peña-Castillo's Lab
Type: User
Company: Memorial University of Newfoundland
Bio: Bioinformatics, Departments of Computer Science and Biology
Location: St. John's, NL, Canada
Peña-Castillo's Lab's Projects
bactermfinder
Machine-learning-based bacterial terminator detector
caninegutmicrobiomestudy
Companion scripts for the manuscript "Gut microbiome composition is related to anxiety and aggression score in companion dogs."
loci2phylip
Python script for phylogenetic analysis
promotech
Machine-learning-based general bacterial promoter prediction tool.
promotech-cnn
Bacterial promoter prediction using a CNN
prona
Machine-learning based model for predicting interactions between bacterial sRNAs and proteins.
srna-detect
A script to detect sRNAs from RNA-seq data
srnacharp
An automated pipeline to characterize sRNAs
srnacharp-srnaranking
Nextflow pipeline combining sRNACharP and sRNARanking
srnaranking
Random Forest classifier to rank nucleotide sequences based on their likelihood to be bona fide sRNAs
srnarftarget
A random forest-based model to predict transcriptome-wide targets of sRNAs.
topaffy
Inferring binding preferences for transcription factors without related binding data
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