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abricate

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

asarp

ASARP: the pipeline for accurate identification of allele-specific alternative mRNA processing

autodebianrepo

Project to create private debian repository automatically

awesome-bacteria

List of computational resources for analyzing bacterial sequencing data.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

buginhost

cg-pipeline

Genome assembly/prediction/annotation pipeline for the Linux command line

circrna

Code related to circularRNA research

class

Code used for teaching/learning

cmast-genome-assembly

cnnc

covolutional neural network based coexpression analysis

coessentiality-browser

Gene browser using coessentiality and related data

covid

covid 19

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

covid-19-gnn

Analyzing spread of COVID-19 using Graph Neural Networks

covid-19-us

Covid-19 reported cases data and analysis for US states - Last Update : April 7, 2020

covid-data

covid 19 data

covid-lstm

Using Recurrent Neural Networks and Web Scraping to find patterns, analyze and forecast the number of infected people.

covid19

SIR code in python to model the spread of COVID-19

covidapp

Transmission Trend Similarity Network Analysis Tool

cytorsuite

Compensation, Gating & Visualisation Toolkit for Analysis of Cytometry Data

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dapars

DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)

ensembl-vep

The Variant Effect Predictor predicts the functional effects of genomic variants

epiviz

EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

exampledatasets

additional example files for cytoscape, gephi and neo4j

faes_metagenomics

course materials

falco

A quick and flexible single-cell RNA-seq processing framework on the cloud

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

fusionfilter

source code for FusionFilter