Comments (4)
RuiqiaoHe
commented on July 30, 2024
Hi Nemo,
Thank you for your appreciation. We have uploaded pre_FMT_sel.R in the folder analysis_code_Rmd. Hope this will meet your needs.
Best,
RuiqiaoHe
from fmt_enterotype.
Axolotl233
commented on July 30, 2024
thank you for quickly reply. it perfect ! i will download it right now
from fmt_enterotype.
Axolotl233
commented on July 30, 2024
Hi Ruiqiao,
Sorry for bothering you again, I have tested part of the script, and it worked. But other parts lack input tables of "ma_arare" and "fmt_meta.txt". Could you kindly provide it again?
I am a new Ph.D. candidate in microbiology, so my progress is a bit slow. I will be very grateful to me if you give me any help.
Best,
Nemo
from fmt_enterotype.
RuiqiaoHe
commented on July 30, 2024
Hi Nemo,
I am happy to hear that our model script works for you. The two input tables are the alpha diversity file ("ma_arare") and the FMT relationship file ("fmt_meta.txt"). Their format will be described below, and you can change it according to your own project:
ma_arare:
| -- | shannon | chao1 | observed_otus |
|---|---|---|---|
| Sample 1 | -- | -- | -- |
| Sample 2 | -- | -- | -- |
| ... | -- | -- | -- |
| Sample N | -- | -- | -- |
fmt_meta.txt:
| SRA_Sample | Status | Time | ID | PRJ | Sex | Age | Diease1 | postfmt_symptoms | Donor_sra | Previous_sra |
|---|---|---|---|---|---|---|---|---|---|---|
| Sample 1 | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| Sample 2 | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| ... | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| Sample N | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
Hope this information can help you!
from fmt_enterotype.
Related Issues (2)
- Lack of input file HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from fmt_enterotype.