Comments (3)
Hi @OliverAshton1,
Thanks for the detailed report. I just checked, and was able to install Empress using pip into a new QIIME 2 2021.11 environment (with the same software versions as you've listed in Versions.txt
) on a Linux computer. This, together with the exact error message you got, implies that things are going wrong when installing the iow
library into your system.
The origin of the installation error seems to occur when trying to build one of iow
's dependencies (line 81 of your error message file):
ar -csru libbitarr.a bit_array.o
make: ar: No such file or directory
make: *** [Makefile:25: libbitarr.a] Error 127
From what I can tell, the reason you're running into this problem is that the ar
command (which creates / extracts certain types of archives) is not installed on your system (and it looks like it is installed on my Linux system already, so this would explain why I don't encounter this problem when installing Empress).
It seems like ar
is part of the binutils
package, so I think that installing binutils
should then allow you to install Empress. Long story short, could you please try installing binutils
, and then try re-installing Empress? I'm not very familiar with WSL, but from some googling I think something like
sudo apt-get install binutils
should do the trick for installing binutils
in WSL.
Let us know if this works out!
from empress.
Hi @fedarko
As you recommended I used:
conda activate qiime2-2021.11
sudo apt-get install binutils
pip install empress
qiime dev refresh-cache
qiime empress --help
binutils installed 6 new packages, then Empress installed first time, on both my PCs that showed the error.
Many thanks for your quick reply!
Oliver
from empress.
Fantastic, thanks @OliverAshton1! Glad that worked.
I just created a new issue (#553): we'll add this information to EMPress' documentation to help other people who run into this problem in the future, since I imagine that other WSL users may also encounter this.
from empress.
Related Issues (20)
- Length legends' SVG exporting logic doesn't account for long titles
- set the min, middle, max value of the colorbar HOT 2
- Error when running with greengenes taxonomy files, integer ID field causes type issue HOT 4
- Need to un-hide "Update" buttons when enabling sample / feature metadata coloring tabs after finishing an animation
- Don't resize legend when changing non-color-related things?
- Continue legend overflow on new line HOT 1
- Use a more specific class name than 'control' in Empress' CSS HOT 2
- Possible for Empress tree coloring to break when using timed events in Empire plots
- Add convenience method to empress.js that gets the 0-based index of a feature metadata column
- Adding info on feature metadata format in README HOT 3
- Trying to install using the comand in the instructions but get always the same error HOT 6
- Document dependence on Xcode for macOS systems
- Allow settings import/export HOT 6
- Document dependence on binutils
- Adding midpoint coloring HOT 1
- Support discretization as an alternative to continuous coloring
- Race condition / itermittent failure in one of the barplot tests
- Option to overwrite existing directory HOT 4
- McHelper QZV links don't load on q2view (expired certificate?) HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from empress.