Comments (2)
Suggest redirecting to Qiime - we will not be able to call QIIME internally due to dependency conflicts and I don't think it is useful to re-invent the wheel if there is already a script in Qiime that does that. Once that script is available in QIIME2 and deblur is also there it should be simpler to explain the pipeline (note that this is similar as split libraries, so it is just another step that we can link at the end)
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Agree with @josenavas, taxonomy assignment is a logically distinct issue resolved in other packages
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Related Issues (20)
- new release: mix case fixing HOT 1
- illumina 1.9 support? HOT 1
- convert float to int HOT 3
- Failure to write BIOM file - OSError: Unable to create file HOT 1
- Deblur workflow output HOT 14
- Indels aren't calculated correctly HOT 6
- Derivation of error profile HOT 2
- Is it possible to turn off chimera checking? HOT 4
- Not sure where counts are going for dominant sequence HOT 1
- "ERROR ...: Problem running vsearch dereplication on file" HOT 1
- bug Mac, error message HOT 1
- Whether deblur trim the read length with multipile sequence alignment? HOT 9
- Crash after saving biom table and attempting to remove artifacts
- Novaseq support HOT 1
- Is there an equivalent deblur-stats output in the stand alone version? HOT 4
- Can you recommend some reference databases (Positive mode) for ITS and 18S sequences? HOT 8
- Question about using Deblur in meta analysis HOT 1
- Deblur installation error HOT 5
- support click 8
- indexdb_rna not found HOT 6
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