Comments (5)
Hi @bayjan
I would be very interested to know what ontology / ontologies do you have in mind?
Also, if you think some concept is missing from the EDAM ontology you can always request to have it added at:
https://github.com/edamontology/edamontology/issues/new/choose
Thank you,
Hans
from biotoolsschema.
Hi @hansioan
Thank you for your quick response. Actually I wanted to add some machine learning related concepts to some multiomics-related tools at bio.tools; however, such concepts needs to be present in EDAM or as you suggested it needs to be added. Someone had already opened an issue regarding some of these concepts and I asked about the status of that issue and @matuskalas from EDAM ontology re-opened that issue edamontology/edamontology#360, which is also related to this issue: edamontology/edam-bioimaging#17. So, I think some concepts will already be there and hopefully others can be added soon to EDAM, because direct transfer from other ontologies can be somewhat complicated.
Here are a few concepts out of many I am planning to add:
Concept | ontology_id |
---|---|
Machine learning | EDAM:topic_3474 |
Unsupervised learning | ENM:8000003 |
Supervised learning | ENM:8000002 |
Neural network | NCIT:C17429 |
Deep learning | MESH:D000077321 |
Dimensionality reduction | EDAM:operation_3935 |
Clustering | EDAM:operation_3432 |
Actually concepts like Unsupervised learning
and Supervised learning
are already present as narrow synonyms of machine learning, which I think bit misleading. So, probably more effort is needed to add such terms correctly, while not duplicating available concepts.
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Hi @bayjan
So adding some of the concepts in EDAM would be enough in your case? So no need for another ontology?
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All what you mentioned is modelled as separate concepts in EDAM Bioimaging, and as such will be merged into the main EDAM in due course.
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Thanks, that is a very good news. So, I need to wait for the next EDAM release. Meanwhile I will check for the presence of all my concepts at WebProtégé for EDAM Bioimaging live version. I hope it is fine if I close this issue if all the concepts I want are already there at the EDAM Bioimaging live version.
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