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hansioan avatar hansioan commented on September 5, 2024

Hi @bayjan

I would be very interested to know what ontology / ontologies do you have in mind?

Also, if you think some concept is missing from the EDAM ontology you can always request to have it added at:
https://github.com/edamontology/edamontology/issues/new/choose

Thank you,
Hans

from biotoolsschema.

bayjan avatar bayjan commented on September 5, 2024

Hi @hansioan

Thank you for your quick response. Actually I wanted to add some machine learning related concepts to some multiomics-related tools at bio.tools; however, such concepts needs to be present in EDAM or as you suggested it needs to be added. Someone had already opened an issue regarding some of these concepts and I asked about the status of that issue and @matuskalas from EDAM ontology re-opened that issue edamontology/edamontology#360, which is also related to this issue: edamontology/edam-bioimaging#17. So, I think some concepts will already be there and hopefully others can be added soon to EDAM, because direct transfer from other ontologies can be somewhat complicated.

Here are a few concepts out of many I am planning to add:

Concept ontology_id
Machine learning EDAM:topic_3474
Unsupervised learning ENM:8000003
Supervised learning ENM:8000002
Neural network NCIT:C17429
Deep learning MESH:D000077321
Dimensionality reduction EDAM:operation_3935
Clustering EDAM:operation_3432

Actually concepts like Unsupervised learning and Supervised learning are already present as narrow synonyms of machine learning, which I think bit misleading. So, probably more effort is needed to add such terms correctly, while not duplicating available concepts.

from biotoolsschema.

hansioan avatar hansioan commented on September 5, 2024

Hi @bayjan

So adding some of the concepts in EDAM would be enough in your case? So no need for another ontology?

from biotoolsschema.

matuskalas avatar matuskalas commented on September 5, 2024

All what you mentioned is modelled as separate concepts in EDAM Bioimaging, and as such will be merged into the main EDAM in due course.

from biotoolsschema.

bayjan avatar bayjan commented on September 5, 2024

Thanks, that is a very good news. So, I need to wait for the next EDAM release. Meanwhile I will check for the presence of all my concepts at WebProtégé for EDAM Bioimaging live version. I hope it is fine if I close this issue if all the concepts I want are already there at the EDAM Bioimaging live version.

from biotoolsschema.

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