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Bio-Otto

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Hey 👋🏻,

I am currently a PhD student in the Department of Bioengineering at Marmara University from Türkiye 🇹. I am interested in, write about, and develop (open source) software solutions using Python, C and Matlab mostly.

You can see what I am currently up to on Bio-Otto.

📬 Get in touch

👉🏻👉🏻📧 Sign up for my newsletter.

🌳 My Digital Garden

You can find my blog posts on http://compbio-hub.com/. I write about things I am familiar with including Python, Matlab, C, and CSS. I also do reviews of software and hardware.

🤜🏻🤛🏻 Support Me

You can support me and [buy me a coffee][8], if you want. 🙏🏻

📈 My GitHub Stats

Bio-Otto's GitHub Stats

HIbrahim's Projects

af2_conformations icon af2_conformations

A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2

amidd icon amidd

Introduction to Applied Mathematics and Informatics in Drug Discovery (AMIDD)

cdnjs icon cdnjs

🤖 CDN assets - The #1 free and open source CDN built to make life easier for developers.

chem324 icon chem324

Introduction to Quantum Mechanics Lecture Notes (Chem324, Fall 2019)

chem563 icon chem563

Statistical Mechanics Lecture Notes (Chem563)

contact_map icon contact_map

Contact map analysis for biomolecules; based on MDTraj

dashmd icon dashmd

Real time monitoring and visualization of Amber MD simulations

dask-traj icon dask-traj

This will be a parallel implementation of mdtraj, using dask

deepchem icon deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

deepscm icon deepscm

A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict antibody viscosity.

dmol-book icon dmol-book

Deep learning for molecules and materials book

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