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bigdataage's Projects

2ndgs_pipelines icon 2ndgs_pipelines

Perl 5 and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.

biomoleculedistribution icon biomoleculedistribution

The Distribution or Subcellular Localization of Bio-molecules, such as Proteins and non-coding RNAs.

defenhancer icon defenhancer

Definition of Enhancers based on the ChIP-seq data of H3K27ac, H3K4me3 (optional) and H3K27me3 (optional) .

eed-hdac icon eed-hdac

Bioinformatics analysis in EED-HDAC project, "Polycomb EED Orchestration of Heart Maturation is PRC2-independent".

ggplot2examples icon ggplot2examples

Some self-defined functions for all kinds of figures mainly based on ggplot2.

links icon links

Some websites may be useful for me.

ngs-pipelines icon ngs-pipelines

Perl source codes for next generation (second generation) sequencing data analysis by integrating lots of open-source softwares.

nucleosome icon nucleosome

All my source codes about the everything of nucleosomes.

nucleosometurnover icon nucleosometurnover

Upstream and Downstream of locus-specific nucleosome turnover in adult mouse cardiomyocytes (as a instance or representation of non-proliferating mammalian cells).

pipidabs icon pipidabs

PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.

sgrna icon sgrna

Design genom-wide sgRNAs by using CRISPRseek.

src-examples icon src-examples

Source codes or examples for C/C++ and Linux Shell/AlgDS, Java/Javascript and SQL/ML, Python and Perl, R and Julia,Go and Clojure.

xqtm icon xqtm

molecular quantitative trait methylation (QTM) analysis

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