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auspices

Automated System Processing Infinite Cellpainting Experiments with Step functions

bioimagebook.github.io

An introduction to bioimage analysis - http://bioimagebook.github.io

cellprofiler

An open-source application for biological image analysis

cellprofiler-plugins

Community-contributed and experimental CellProfiler modules.

cellprofilerstats

Programs for turning Cell Profiler data into graphs and meaningful statistics

core

Core classes and components used by CellProfiler

cytominer

Library for mining patterns in perturbation data

cytominer_database-feedstock

A conda-smithy repository for cytominer_database.

distributed-fiji

Like Distributed-CellProfiler, but for FIJI. Run FIJI scripts in parallel in the cloud, using infrastructure you define.

distributed-something

Run encapsulated docker containers that do something in the Amazon Web Services infrastructure.

distributed-something-1

Run encapsulated docker containers that do... something in the Amazon Web Services infrastructure.

distribution

Everything needed to build CellProfiler for your favorite environment.

handlens

handytools

Various tools for renaming files, working with LightCycler qPCR data, other tweaks

homebrew-core

🍻 Default formulae for the missing package manager for macOS

jupyter-book

Create beautiful, publication-quality books and documents from computational content.

microscopyforbeginnersreferenceguide

A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation

my_book

profiling-handbook

Image-based Profiling Handbook

profiling-recipe

Image-based Profiling Recipe

pycytominer

cytominer python package

pycytominer-feedstock

A conda-smithy repository for pycytominer.

python-javabridge

Python wrapper for the Java Native Interface

qi_2024_analysis_lab_manual

redactle-notebook

tutorial

tutorials

CellProfiler tutorial pipelines and images

unet_3d_c_elegans

3D segmentation of the C. elegans germ line