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covid19

Analyses about the COVID-19 virus

cytoflow

A Python toolbox for quantitative, reproducible flow cytometry analysis

django-subjective-sort

Subjectively sort a list, such as with drag-and-drop

epidemiology

Epidemiological simulations

healthcheck

Simple healthcheck portal

iproute

IP Routing Table in Haskell

mettler_toledo_device_python

priority_health

pymc

PyMC version 3 (PyMC 2 is in branch 2.3)

qm-homework

torchdiffeq

Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

wdist

WDIST (Weighted DISTance calculator) tool supporting the BGI Cognitive Genomics Lab's data analysis pipeline, and designed to grow into a full-scale replacement for PLINK (eta early 2014). Since it uses streaming algorithms instead of keeping the entire dataset in memory, it can handle much larger files without the need for e.g. tedious chromosome splitting. It also incorporates numerous micro- (and a few macro-) optimizations which collectively speed up most of PLINK's slowest functions by factors exceeding 100x (and sometimes even exceeding 1000x).