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bdgp's Projects

detectdesign icon detectdesign

toolkit for finding likely cas9 off-target binding and effect on gene expression, designing sgRNAs and pairs of sgRNAs with minimal off-target effect on gene-expression

figshare.js icon figshare.js

Interact with the Figshare API from the CLI or JavaScript

macfusion icon macfusion

Latest Macfusion-NG binary with latest static SSHFS binary already included

mars icon mars

MARS: improving Multiple circular sequence Alignment using Refined Sequences

openhicamm icon openhicamm

Open High-content acquisition workflow plugin for Micro-Manager

r-build icon r-build

Compile and install R, based on ruby-build

riboseqc icon riboseqc

Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.

spladder icon spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

stanmf icon stanmf

Stability-driven nonnegative matrix factorization (staNMF)

unicycler icon unicycler

hybrid assembly pipeline for bacterial genomes

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