About samtools invalid option in tigmint-make arcs mode about tigmint HOT 4 CLOSED

HI @ClarenceHsiang,

Could you report the version of samtools that you are using? (With samtools --version) Also, could you double check that you are using your conda installat ion of samtools? (With which samtools)
At first glance, it looks like you could be using an older version of samtools which is missing some of the options in newer versions.

Thank you for your interest in Tigmint!
Lauren

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Hi @ClarenceHsiang,

Could you try updating your samtools to a later version? Ex. 1.15? Looking at the samtools release notes, the -t parameter was introduced in version 1.5 in 2017, so any version newer than that should work.

from tigmint.

Dear Tigmint Team:
Good morning.
Sorry for the late replay.
The samtools version is Version: 0.1.19-44428cd by using conda.

Thank you very much

Program: samtools (Tools for alignments in the SAM format)
Version: 0.1.19-44428cd

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This issue has been automatically marked as stale because it has not had any recent activity. It will be closed if no further activity occurs. Thank you for your interest in Tigmint!

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