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Marcin's Projects

cpgtools icon cpgtools

Python package to analyze DNA methylation data

dmrichr icon dmrichr

An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

drc icon drc

:exclamation: This is a read-only mirror of the CRAN R package repository. drc — Analysis of Dose-Response Curves. Homepage: http://www.r-project.org, http://www.bioassay.dk

epigbs icon epigbs

Code for working with epiGBS data

genomation icon genomation

R package for genomic feature analysis and visualization

lifesum icon lifesum

Sample project using Lifesum's api for searching and storing food suggestions

methyliftover icon methyliftover

A utility to map bisulfite sequencing data to the Illumina 450K methylation CpG set

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nudup icon nudup

NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in NuGEN products.

wgbs_ucd icon wgbs_ucd

Analysis of methylation calls obtained using bwa-meth with bsseq

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