bauerlab Goto Github PK

beaconsearchstring

Search string generator e.g. for PathBeacon

crispr-chip-notebook

Notebook for Crispr-chip experiments

goana

goana_data

Repository for the GOANA paper

gt-scan2

Chromatin- and Transcription-aware target site optimization tool for CRISPR/CAS9

gt-scan2-notebooks

Notebooks for GT-Scan2

hlatyper

Technical comparison of computational HLA prediction tools from NGS data

methylaltsplicing

Deep learning approach to predict alternative splicing from DNA methylation data.

ngsane

Analysis Framework for Biological Data from High Throughput Experiments

resolvepairs

Resolve pair information for ambiguously named reads when converting SAM to FASTQ

tuscan

TUSCAN is a CRISPR-Cas9 target-site activity predictor, which is phenotypic-independent and fast; hence suitable for genome-wide screens.

variantspark

VariantSpark is a framework for applying Spark-based Machine Learning methods to whole-genome variant information

varscot

Variant-aware scoring of off-targets for CRISPR Genome Engineering