bassiousmaximus Goto Github PK

binder-r-basics

binder-r-gus

bio5400_practice

Jupyter Notebook practice for Fall 2023 CSULA BIO5400

biodata

All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

bvcn-binder-fegenie

Two introductory lectures and tutorial on the microbial iron cycle and FeGenie

bvcn-binder-gtotree

Lesson and tutorial on generating codon alignments and estimating dN/dS using codeml (PAML)

bvcn-binder-kegg-koala

Lesson and tutorial on the KEGG database, and annotating with Blast/Ghost/KofamKOALA and KEGGDecoder

bvcn-binder-lesson1

bvcn-binder-magiclamp

Tutorial for the MagicCave toolkit

csula_biol5400

General repository to class-related materials: BIOL5400 Seminar in Data Analysis

gcbs_virfinder

gtotree

A user-friendly workflow for phylogenomics

guaymas_acetocathedral

ASV analysis of Cathedral Hill and Acetobalsamico sites at Guaymas Basin, Gulf of California

images

keggdecoder-heatmap

metabolic heatmap

lesson1_data

Lesson1_data

magiclamp

A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.

micr3900lab

MICR3900 Bioinformatics Module

r

Using R with Jupyter / RStudio on Binder

spongia

SPONGIA: a consolidated, metadata-integrated, public repository for sponge-related ‘omics studies.

taxonsluice

Reference-based identification of potential contaminants in mothur-formatted OTU tables