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followers: 40.0 following: 62.0 repos: 40.0 gists: 25.0

Name: Bogdan Kirillov

Type: User

Hi there, I'm Bogdan A. Kirillov 👋

PhD in Life Sciences, Machine Learning Developer.

🔭 I’m currently working on several Computational Biology projects
🌱 I’m currently learning how to model a living system with PDEs
💬 Ask me about how to build a Machine Learning-powered MVP for your startup
⚡ Fun fact: cat gifs are the ultimate drug

Contacts and links:

PhD thesis:

Uncertainty quantification and neural network interpretation for studying CRISPR mechanics: 10.13140/RG.2.2.15498.85448

Latest papers:

Measuring internal inequality in capsule networks for supervised anomaly detection: https://doi.org/10.1038/s41598-022-17734-7

Uncertainty-aware and interpretable evaluation of Cas9–gRNA and Cas12a–gRNA specificity for fully matched and partially mismatched targets with Deep Kernel Learning: https://academic.oup.com/nar/article/50/2/e11/6430490

Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235179 (preprint: https://www.biorxiv.org/content/10.1101/2020.06.11.145805v1)

Bogdan Kirillov's Projects

awesome-capsule-networks

A curated list of awesome resources related to capsule networks

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-underinvestigated-biology

Topics in biology that are not researched as much as they should be

bakirillov

bakirillov.github.io

capsnet

CapsNet (Capsules Net) in Geoffrey E Hinton paper "Dynamic Routing Between Capsules" - State Of the Art

capsule_ad

Code for the reproduction of "Measuring Internal Inequality in Capsule Networks for Supervised Anomaly Detection"

capsules

My implementation of capsule network with dynamic routing

clojured-1dca

Simulation of one-dimensional cellular automata in Clojure.

cnportraits

Implementation of Complex Network portraits algorithm

coordconv

Pytorch implementation of "An intriguing failing of convolutional neural networks and the CoordConv solution" - https://arxiv.org/abs/1807.03247

deepmotif4pytorch

Implementation of DeepMotif in pytorch

episodic-memory-ml

Sources for "Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning"

exocat

Personal exocortex manager

fasttergram

Vector representations for DNA sequences without predefined length of k-mer

fl_chart

A powerful Flutter chart library, currently supporting Line Chart, Bar Chart, Pie Chart and Scatter Chart.

gm_skoltech

Journal club presentation and numerical experiments for Graphical Models mini-course at Skoltech

hse-dc-2020

HSE Data Culture course, 2020

labelapki

Pygame-based image annotation tool for YOLO

msc-thesis

Thesis project - CRISPR CAD

mtiscript

Script for usage of multiple TOR instances (moved old project from bitbucket)

myxmonadconfig

My XMonad Config

neurovalidation

Code for NN-based construct validity evaluation paper in DTGS'18

otus-open-lesson

Open lesson for Otus, 24.03.2022

pomo.py

Simple CLI Pomodoro timer

pytorch-unsupervised-segmentation

rgramlib

Implementation of "R-grams: unsupervised learning of semantic units" (https://arxiv.org/abs/1808.04670).

rnumber

Code for post at t.me/biolapki about random number

rustyguide

Naive potential CRISPR gRNA extraction in Rust

skoltech-mtf2020

Project for matrix and tensor factorization course at Skoltech