Related Issues (20)
- enhancement RCy3: enrichmentmap build with Great: not able to filter using binomial q value (only hypergeometric test available) HOT 1
- Mastermap with enrichmentmap of Great results: gs_size should be changed to be TotalGenes instead of ObsGenes TotalGenes HOT 6
- cytoscape Enrichment Map no responce HOT 1
- Show data set colors for AutoAnnotate summary network.
- Is it the expectation of EM that the ranks file is sorted? HOT 12
- testing EM 3.3.5 ( enhancement): be able to see full name in heatmap table headers HOT 1
- testing EM3.3.5: changing Data Set Colors change all edges to color dataset1 HOT 1
- testing EM 3.3.5: hiding one dataset reset the style. HOT 2
- dataset resolver doesn't work for FGSEA HOT 1
- EM 3.3.5: force directed layout does not work on hidden edges (but organic layout does) HOT 2
- EM 3.3.5: question? aggregated summary HOT 1
- Heatmap only displaying expression/ranks for dataset where geneset is significant eventhough it is found in the second dataset HOT 1
- EM can't recover from fdr q-value of NA - infinite loop
- Ambiguous error message - try and create EM with just enrichments, expression and ranks but forget gmt file
- Error - Gene sets in enrichment file missing from GMT file HOT 7
- Leading edge not working in EM 3.3.5
- enrichmentmap build command - two generic datasets not working properly HOT 1
- FGSEA-service: plumber rounds q-values, affects filtering HOT 2
- Expression file with blank lines at end causes unhelpful error message. HOT 1
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