Comments (1)
Added 2686084 will be in v1.3.0 release
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Related Issues (20)
- MOB-Suite recon [bug] HOT 7
- ncbigenomedownload is not a known workflow HOT 3
- [bug] PlasmidFinder CSV Concat doesn't include sample name column HOT 4
- [feature] it should be easier to extract gene/protein alignments HOT 1
- [feature] improve docs - add required parameters to doc site
- Error creating conda environment during test [bug] [mac] HOT 9
- Sample IDs vs Experiment accessions HOT 3
- error message when installing Bactopia on an HPC cluster HOT 2
- [feature] Full AMRFinderPlus search combining results to get maximum information HOT 2
- Error linking to bactopia results for ariba tool[bug] HOT 5
- roary module in pangenome failed [bug] HOT 10
- --reference file not working for snippy tool [bug] HOT 4
- Error executing process > 'BACTOPIATOOLS:PANGENOME:CLONALFRAMEML:IQTREE (start-tree) [bug] HOT 10
- [bug] (or user error) kraken2 db not found HOT 1
- Conda create not working for bactopia 3.0.0 HOT 5
- [bug] Poor quality / unmappeable samples cause `snippy-core` to fail with a confusing erorr message
- Bactopia-tools eggnog - decorate_gff option HOT 2
- [bug]Process `BACTOPIA:ASSEMBLER:ASSEMBLER_MODULE (reads)` terminated with an error exit status (1) HOT 33
- 2024 Bactopia Usage Survey
- [bug] RuntimeError from Gubbins via Singularity in Snippy subworkflow HOT 4
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