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b-niu.github.io

biobss

A package for processing signals recorded using wearable sensors, such as Electrocardiogram (ECG), Photoplethysmogram (PPG), Electrodermal activity (EDA) and 3-axis acceleration (ACC).

bioinformaticsscripts

Bioinformatics scripts for NGS analysis.

chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

chromosomemappings

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

clonevol

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

dmwr

:exclamation: This is a read-only mirror of the CRAN R package repository. DMwR — Functions and data for "Data Mining with R"

dna-seq-analysis

DNA sequencing analysis notes from Ming Tang

docker-bam_readcount_helper-cwl

docker-citup

docker-pysamstats

estimateclonality

Forked from https://bitbucket.org/nmcgranahan/pancancerclonality/src/master/.

fusion

fusioninspector

FusionInspector code

gistic2

Genomic Identification of Significant Targets in Cancer (GISTIC), version 2

hlascan

learningml

学习机器学习

license

littletricks

machine-learning

macos

maftools

Summarize, Analyze and Visualize MAF files from TCGA or in house studies.

mapscape

Visualization tool for spatial clonal evolution.

neoantigens

🏺 Exploring novel tumor epitope identification

ngs-pipeline

oncokb-annotator

Annotates variants in MAF with OncoKB annotation.

phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

radcap

Software for processing data from RADcap