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awillats

brian2

Brian is a free, open source simulator for spiking neural networks.

brian_delayed_gaussian

circuit-visualizer-p5

(Experimental) visualizer for understanding networks and properties of their adjacency matrices

clinc

closed loop identifiability in neural circuits

cloctools

Overview paging linking to other CLOCTools repositories. CLOCTools are a library of tools for closed-loop neuroscience

dynamics-in-neuro-reading-list

This reading list is centered around the practical application of linear dynamical systems models to predict neural data

dynamics-visualizer-p5

An interactive visualization of what a dynamical system does, and why eigenvalues are cool

dynamics_in_neuro_lectures_2021

A set of lectures I gave for Chris Rozell's "Information Processing Models in Neural Systems" course at Georgia Insitute of Technology

hmm

simple hidden markov model code intended to support control of switching linear dynamical systems

hw-opticloc

Optimal Closed Loop Optogenetic Control

interactive-visualization-resources-and-advice

A comparison of several Python libraries for interactive visualization, as well as advice for effective data viz

lds-ctrl-est

A C++ library for estimation and control of linear dynamical systems (LDS) with Gaussian or Poisson observations.

markdown-cv

Adam Willats's Curriculum Vitae (CV) based on a markdown template by elipapa

markdown-manuscript-template

basic structure for a planning, writing, sharing a scientific manuscript and related code

neural-concepts

Neural concepts explores different neuroscience concepts visually and interactively

python-wikeddiff

Python port of the wikEdDiff JavaScript library

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

rtxi-setup_stac

helper "supermodule" for installing other stac code

rtxi-stac

implementing state-aware closed-loop control (StAC) of firing rate in RTXI: settings, algorithms, and workspaces

rtxi_hmm_decoder

rtxi_hmm_generator

rtxi module which generates state switching and point-process emissions

scripts

A collection of scripts in various languages

skillsworkshop2017

telescope-heading.nvim

An extension for telescope.nvim that allows you to switch between headings

xcorr-visualizer-p5

interactive viz for cross-correlations in small networks (using p5 for interactivity)