This project is licensed under the GNU GPL-3.0-or-later, see the LICENSE file for details.
aureme Goto Github PK
Type: Organization
Bio: AUtomated REconstruction of MEtabolic models
aureme's Projects
aucomana
aucome
Automatic Comparison of Metabolism
aureme
aureme_docker
emapper2gbk
Convert GFF, fastas, annotation table and species name into Genbank.
esmecata
From taxonomic affiliations to annotated proteins using UniProt database.
holointeract
Study interactions hosts and microorganisms at metabolic level.
meneval
metage2metabo
From annotated genomes to metabolic screening in large scale microbiotas
mpwt
Pathway Tools multiprocessing wrapper (for PathoLogic).
mpwt-docker
A dockerfile for multiprocessing Pathway-Tools.
mpwt-singularity
Singularity recipe for Pathway-Tools and mpwt.
ontology_sunburst
Sunburst representation of ontologies
padmet
Python library for hAndling metaData of METabolism.
padmet-utils
prolipipe
The prolific pipeline is about genome annotation and metabolic pathway reconstruction. From .fasta genomes, it enables to find if strains of bacteria are theorically able to produce metabolites
wiki-metabolic-network
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