aswinssoman Goto Github PK

advanced-markdown

Learn about advanced markdown techniques

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

aswinsoman.github.io

github url

aswinssoman

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

b-scite

bam-readcount

count DNA sequence reads in BAM files

basecalling-comparison

A comparison of different Oxford Nanopore basecallers

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bearscc

bioalignments.jl

Sequence alignment tools

biocworkshops

Workshops for learning Bioconductor

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

calista

CALISTA: Clustering And Lineage Inference in Single Cell Transcriptional Analysis

cellrouter

Reconstruction of complex single-cell trajectories using CellRouter

center-align

Center-align the text in a string.

cicero

cidr

Clustering through Imputation and Dimensionality Reduction

clusterexperiment

R package of techniques for comparing clusterings of single-cell sequencing data

color-thief-site

conquer

consistent quantification of external RNA-seq data sets

convert-blast-to-bed

Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.

coursedata

cyp8b1

CYP8B1

deconvolution2016

Code and manuscript files for Aaron and Karsten's deconvolution paper.

dynbenchmark

Comparison of methods for trajectory inference on single-cell data 🥇

dynguidelines

Selecting the optimal trajectory inference based on a given dataset and user input 🔮

dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

extracting-core-claims

An attempt to extract single core claims from scientific articles

galaxy-hub

Galaxy Community Hub