Example 8.21 may have some typos about bmad HOT 6 CLOSED

On Wed, Nov 15, 2017 at 8:21 AM, Blaine Mooers ***@***.***> wrote: Hi Emille, Thank you very much for finding the solution required to upgrade script 8.21! The change on line 54 from 'state' to 'scaling' solved the problem for me too. Before your post today, I stepped back to pymc3 version 3.0. That also worked. To do so, I used the following command to uninstall pymc3.1 and reinstall pymc3.0. sudo -H python -m pip install 'pymc3==3.0' --force-reinstall On Wed, Nov 15, 2017 at 7:43 AM, Emille Ishida ***@***.***> wrote: > Oh sure! just now I realized that you had written this information in > your initial post. > The issue comes because from version 3.1 on there was a change on the > accepted NUTS options. > > https://discourse.pymc.io/t/differenc-between-pymc-3-1-and- > pymc-3-0-on-nuts/293/2 > > so, if we substitute line 54 with > > step = pm.NUTS(scaling=start) > > it should run without problems. > let me know if this works for you! > > — > You are receiving this because you authored the thread. > Reply to this email directly, view it on GitHub > <#1 (comment)>, or mute > the thread > <https://github.com/notifications/unsubscribe-auth/AOeSC6dwOYmHimcdux0mbISKk_PIB1JKks5s2uqFgaJpZM4QdpgU> > . > -- Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center Rm. 466 Letter address: Shipping address: P.O. Box 26901, BRC 466 975 NE 10th Street, BRC 466 Oklahoma City, OK 73190 Oklahoma City, OK 73104-5419 office: (405) 271-8300 lab: (405) 271-8313 fax: (405) 271-3910 e-mail: ***@***.*** (or ***@***.***) http://www.oumedicine.com/body.cfm?id=3877&oTopID=3877

On Tue, Nov 14, 2017 at 11:33 AM, Emille Ishida ***@***.***> wrote: Thanks for pointing out the typo! it has being corrected. After correcting the typo you mentioned I ran the script here and got the expected result. pymc3.*version* = 3.0 what version of pymc3 are you using? — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AOeSC6S07TSk05onPjgaGBSPp0aBZsmPks5s2c79gaJpZM4QdpgU> .

On Wed, Nov 15, 2017 at 7:43 AM, Emille Ishida ***@***.***> wrote: Oh sure! just now I realized that you had written this information in your initial post. The issue comes because from version 3.1 on there was a change on the accepted NUTS options. https://discourse.pymc.io/t/differenc-between-pymc-3-1- and-pymc-3-0-on-nuts/293/2 so, if we substitute line 54 with step = pm.NUTS(scaling=start) it should run without problems. let me know if this works for you! — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AOeSC6dwOYmHimcdux0mbISKk_PIB1JKks5s2uqFgaJpZM4QdpgU> .