assem-metwally Goto Github PK

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

dockeroverview

Notes on Docker from a YouTube tutorial

ecoute

Ecoute is a live transcription tool that provides real-time transcripts for both the user's microphone input (You) and the user's speakers output (Speaker) in a textbox. It also generates a suggested response using OpenAI's GPT-3.5 for the user to say based on the live transcription of the conversation.

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

igdiscover

Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads

immuno_gcp_wdl_compute1

Tutorial to run immuno.wdl on Google Cloud

intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

isb_course_2021

Materials and presentations for the 2021 ISB Virtual Microbiome Series.

matplotlib-tutorial

Matplotlib tutorial for beginner

mgc-biosb-singlecellanalysis2022

practical_cheminformatics_tutorials

Practical Cheminformatics Tutorials

r-programming-and-rnaseq-workshop

rna-seq-differential-expression

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

scrna-seq_online

single_cell_rna_seq_workshop

repository for the single cell RNA-Seq workshop

sql-tutorials

Some SQL tutorials I've been creating and posting to Twitter