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aquascope

artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

arunbodd

arunbodd.github.io

boddapati_mkdocs

tutorial for scicomp on mkdocs/github actions

c-wap

SC2 variant detection and composition pipeline

cactus

Official home of genome aligner based upon notion of Cactus graphs

crispr_cas9_grna

gRNAs were designed for exonic regions of specific genes using certain specific conditions to increase specificity of spCAS9 (NAG and NGG) PAM sequences

csbb-v1.0

CSBB (Computational Suite for Bioinformaticians and Biologists) is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments.

ddseeker

A tool for processing Bio-Rad ddSEQ single cell RNA-seq data

gtrap_websearch-tool

An informative and cumulative database for data related to protein synthesis involving (Gene, Transcription factors, Splicing, Post-translational Modifications, Proteins).

hpp_year1_assemblies

Assemblies from HPP Year 1 production

imagenomer

Image, Genome/Transcriptome Explorer (fMRI)

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multiqc_wes

mycosnp-nf

CDCgov/mycosnp-nf

narratives

Narrative markdown files accessed via nextstrain.org/narratives/x

nf-workflow-ebola

ngscheckmate

Software program for checking sample matching for NGS data

niaid

phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

pipeliner

Pipeliner Program

rm_baricitinib_manuscript

Analysis for Barictinib treatement in COVID infected rhesus macaques

scicomp_howtos

Trainings for SciComp Team

scripts

This is a repo with general scripts written over a period of time

scrnaseq

Repository for CCBR single cell RNA-Seq pipeline

spark

Apache Spark implementation of Pyspark

spearman_correlation

Spearman_Correlation_HPA

tautyping-nf

This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic

team-leaders-2022

A repository to share resources and a readiness checklist with team leaders.