arsheedganaie Goto Github PK

2012-11-scripps

Software Carpentry repository for Scripps, Nov 15-16 2012

advancedheatmaptutorial

for YouTube Channel

arsheed

atac-seq

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

ataqv

A toolkit for QC and visualization of ATAC-seq results.

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bioinformatics-one-liners

Bioinformatics one liners from Ming Tang

bipolarcell2016

biscuit_singlecell_imm_icml_2016

R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.

cbioportal

cBioPortal for Cancer Genomics

cellranger

10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

datahub

A centralized location for storing curated data ready for inclusion in cBioPortal.

demo

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

gdc-docs

Official repository for GDC User Guides in Markdown format

github-slideshow

A robot powered training repository :robot:

hopr

This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.

icgc_rnaseq_align

jokergoo.github.io

personal website

mirna

microRNA profiling pipeline

msi-ipython-nb-ex

Example IPython notebooks for MSI

ngs

PennSCAP-T Pipeline

ngs-1

NGS Language Bindings

ngseasy

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

pilon

Pilon is an automated genome assembly improvement and variant detection tool

python-advanced-jupyter

ribbon

A genome browser that shows long reads and complex variants better