applib-sg Goto Github PK

3d-dna

3D de novo assembly (3D DNA) pipeline

abyss

:microscope: Assemble large genomes using short reads

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

amdmigraphx

AMD's graph optimization engine.

annotated-transformer

An annotated implementation of the Transformer paper.

apex

A PyTorch Extension: Tools for easy mixed precision and distributed training in Pytorch

bert

TensorFlow code and pre-trained models for BERT

bowtie

An ultrafast memory-efficient short read aligner

bowtie2

A fast and sensitive gapped read aligner

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

canu

A single molecule sequence assembler for genomes large and small.

cesm

The Community Earth System Model

chatglm-6b

ChatGLM-6B: An Open Bilingual Dialogue Language Model | 开源双语对话语言模型

cnvcaller

colossalai

Making large AI models cheaper, faster and more accessible

cp2k

Quantum chemistry and solid state physics software package

darknet

Convolutional Neural Networks

dcnv2_windows

Deformable Convolutional Networks v2 with Pytorch

deeplearningtutorials

Deep Learning Tutorial notes and code. See the wiki for more info.

deepspeed

DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.

doubleheadsrcnn

Rethinking Classification and Localization for Object Detection

exonerate

A fork of exonerate: a generic tool for sequence alignment

faiss

A library for efficient similarity search and clustering of dense vectors.

fast-scnn-pytorch

A PyTorch Implementation of Fast-SCNN: Fast Semantic Segmentation Network

fastchat

An open platform for training, serving, and evaluating large language models. Release repo for Vicuna and Chatbot Arena.

fastfold

Optimizing AlphaFold Training and Inference on GPU Clusters

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

glm

GLM (General Language Model)

hisat2

Graph-based alignment (Hierarchical Graph FM index)

horovod

Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet.