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116117bot

A proof of concept bot, checking impfterminservice.de for available COVID-19 vaccination appointments.

action-nextflow

WIP / NOT WORKING YET: GitHub action for setting up Nextflow https://www.nextflow.io/

adaptercontaminator

Small tool to simulate AdapterContamination of NGS reads and evaluate the findings afterwards.

adapterremovalfixprefix

Fixes adapter removal prefixes to make sure no clashing read names are in the output.

admixr

An R package for running ADMIXTOOLS analyses directly within R. See the project website at https://bodkan.net/admixr.

archpkgs

Arch Packages for bioinformatics tools. Destined for the AUR.

aur-singularity-container

aws-igenomes

Documentation and description of AWS iGenomes S3 resource.

aws-igenomes-build

Building script for AWS-iGenomes

bacass

Simple bacterial assembly and annotation pipeline

bcellmagic

B cell repertoire analysis pipeline.

beerclub

A web application to keep track of the beer accounts for registered members.

bioconda-recipes

Conda recipes for the bioconda channel.

biohackathons.github.io

International BioHackathon Directory of Events, Projects and Communities

bwa-mismatches

cargo-port

cache packages permanently

caw-containers

Containers for CAW

chipseq

Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.

circularmapper

A method to improve mappings on circular genomes, using the BWA mapper

clinvap

clipandmerge

The Clip&Merge Method for paired end read merging and adapter clipping, quality trimming and other FastQ operations.

complexheatmap

Make Complex Heatmaps

configs

Config files used to define parameters specific to compute environments at different Institutions.

cookiecutter

Template for your own top-end Nextflow pipeline, customised using Cookiecutter

damageprofiler

A Java based tool to determine damage patterns on ancient DNA as a replacement for mapDamage

deager

The CLI Components for Dockerized EAGER (deprecated!) - use Singularity instead

dedup

A merged read deduplication tool capable to perform merged read deduplication on single end data.

deepvariant

UNDER DEVELOPMENT: Deep Variant as a Nextflow pipeline

docker-eager

The EAGER pipeline in Docker / DO NOT USE - USE SINGULARITY INSTEAD

eager

A fully reproducible and state of the art ancient DNA analysis pipeline.