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autophy

Autophy is a CLI python package used to cluster labels phylogenetic trees.

coalescenttheory

curvcut

Mathematical basis to remove features from an count tables that are in few samples.

discretizedhighlowspeed

Visualize differences made to mtb suspension in this high low speed discretized spring damper simulation

geneflowgeometries

mrbayes

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

networkgeneflow

nyemetaay

Nyemetaay is a CLI python package for calcuating pop-gen stats and information theory metrics from fasta files.

phycomppy

Phylogenetic Comparison Methods in python

phylocomparapy

phylocomparapy is an python package that allows user to perform phylogenetic comparative methods in python. It contains analysis classes that work on dendropy’s data classes

resamplingnetwork

viralrateshifts

Analysis of shifts in mutation rate of covid19