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23andme-to-ysnps

If you have a 23andMe raw data file which contains Y-DNA data with refSNPs/RSID but not the names of Y-SNPs in ISOGG format, this tool will help you. Please note that only positions of build 37 are supported.

23andme2vcf

convert your 23andme raw file to VCF

advanced-shiny

Shiny tips & tricks for improving your apps and solving common problems

anorris8.github.io

Tips and tricks I have learned.

answers

Random code produced to answer questions on biostars/seqanswers/etc.

beepr

The package that sounds as it is called.

biostats_exercises

centwavep

A fork of centWave - LC/MS peak detection with wavelets.

credential

csear

Cell type enrichment analysis borrowing functions from pSI, EWCE, and phenoTest R packages.

datasciencecoursera

datasharing

The Leek group guide to data sharing

geodiver

hmdbquery

utilities for querying Human Metabolome Database

kandinsky

Turn any dataset into a Kandinsky painting

lace

Building SuperTranscripts: A linear representation of transcriptome data

lenscleanr

Visual implementation of Monocle vignette in Shiny interactive environment

module1

Teaching material for Summer Institute in Statistics for Big Data Module 1.

monocle-release

multiqc

Aggregate results from bioinformatics analyses across many samples into a single report.

mz.unity

mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data

naniar

Tidy data structures, summaries, and visualisations for missing data

nci60_genemetabolite_data

nephele

Nephele Pipeline Scripts

odg

ODG: Omics Database Generator - Integration toolkit for -omics data

open-data-inception

pandoc-templates

Templates for pandoc

pandoc-templates-1

Some elementary (xe)tex templates and css files for Pandoc.

pheno4j

Pheno4j: a graph based HPO to NGS database

r.i.d.a.r

This little piece of code filters through all of the MS1 scans of an MGF file to identify if all of the associated reporter ions are present. If the reporter ions are present then a fold change identification is run. If the fold change is higher than the set threshold, the entire MS1 will be written to a new MGF file that decreases the search time and file size when compared to the original file. This ensures that scans that cannot be quantified are removed and the overall file is de-cluttered.