Comments (3)
Many thanks for your query, a Readme file has been added to this directory.
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Hi,
Thank you very much for your quick help.
Yours,
Mengyao
On Jun 9, 2016, at 4:51 AM, Anthony Nolan HLA Informatics Group [email protected] wrote:
Many thanks for your query, a Readme file has been added to this directory.
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You are receiving this because you authored the thread.
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Hi,
May I ask you two other questions?
In the README file, it states “The entry for each allele is displayed in respect to the reference sequences.”
- In the gDNA alignment file, is the 1st haplotype for example “DQA1*01:01:01:01” the same as the reference sequence?
- Which version of the human genome reference does the alignment correspond to?
- What’s the relationship between the coordinates labeled on the alignment and the human reference coordinate?
Many thanks,
Mengyao
On Jun 9, 2016, at 4:51 AM, Anthony Nolan HLA Informatics Group [email protected] wrote:
Many thanks for your query, a Readme file has been added to this directory.
—
You are receiving this because you authored the thread.
Reply to this email directly, view it on GitHub #63 (comment), or mute the thread https://github.com/notifications/unsubscribe/AAlVdPra60rjz_9yTuyy9BJ9-F9gw5mkks5qJ9QcgaJpZM4IxQcR.
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Related Issues (20)
- About alignment result HOT 1
- DRB3*03:57Q-related issue in the DRB_prot.txt file for releases 3.49.0 to 3.51.0 HOT 1
- Unreachable link in README HOT 1
- Add 3.52.0 release tag, please HOT 1
- Invalid allele name "5N" instead of "50N" IPD-IMGT/HLA Release 3.52.0 HOT 1
- What does the pipe character "|" indicate in the nuc.txt and gen.txt files? HOT 5
- New and changed attributes: releasestatus and releasecomments HOT 2
- HLA-DPB1*1332N exon border change HOT 1
- TCE group assignment for DPB1* 1148:01Q and 1038:01Q HOT 4
- Alignments missing most of sequence HOT 2
- The DPA2 and DPB2 nucleotide alignments include codon numbering but have no cognate peptide alignments HOT 2
- An unexpected change in hla.xml format HOT 3
- 3.54.0 release tag HOT 8
- HLA01143,B*27:18
- Hi.dear
- Release version as JSON and/or XML HOT 4
- Block of allele names with no associated sequences in the HLA-A protein alignment in release 3.55.0 HOT 2
- Discrepancy between TAP2 protein and nucleotide alignments HOT 3
- Discrepancy between the DPA1_prot.txt and DPA1_nuc.txt files for the DPA1*03:05:01Q alleles HOT 4
- The DPA1*01:05 allele is missing from the DPA1 genomic alignment. HOT 3
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