Comments (1)
The hla_gen.fasta only contains the sequences of alleles which have a full length sequence. We consider a full length sequence to be from the start codon to the stop codon including all exons and introns. However in order for a sequence to received an official allele name we only require the exons which code for the antigen recognition site. Therefore many sequences in the database are partial and these partial sequences are not in the individual gen.fasta or hla_gen.fasta. DPA1*03:02 for example only has sequence for exon 2. It will therefore not appear in the hla_gen.fasta.
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Related Issues (20)
- About alignment result HOT 1
- DRB3*03:57Q-related issue in the DRB_prot.txt file for releases 3.49.0 to 3.51.0 HOT 1
- Unreachable link in README HOT 1
- Add 3.52.0 release tag, please HOT 1
- Invalid allele name "5N" instead of "50N" IPD-IMGT/HLA Release 3.52.0 HOT 1
- What does the pipe character "|" indicate in the nuc.txt and gen.txt files? HOT 5
- New and changed attributes: releasestatus and releasecomments HOT 2
- HLA-DPB1*1332N exon border change HOT 1
- TCE group assignment for DPB1* 1148:01Q and 1038:01Q HOT 4
- Alignments missing most of sequence HOT 2
- The DPA2 and DPB2 nucleotide alignments include codon numbering but have no cognate peptide alignments HOT 2
- An unexpected change in hla.xml format HOT 3
- 3.54.0 release tag HOT 8
- HLA01143,B*27:18
- Hi.dear
- Release version as JSON and/or XML HOT 4
- Block of allele names with no associated sequences in the HLA-A protein alignment in release 3.55.0 HOT 2
- Discrepancy between TAP2 protein and nucleotide alignments HOT 3
- Discrepancy between the DPA1_prot.txt and DPA1_nuc.txt files for the DPA1*03:05:01Q alleles HOT 4
- The DPA1*01:05 allele is missing from the DPA1 genomic alignment. HOT 3
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