Comments (7)
from imgthla.
Can you confirm which release version this issue is seen in. We have checked the latest release and the HLA00485 entry for DRB1*14:13, contains 687 bases, as indicated by the coordinates.
from imgthla.
This occurred in both 3.29.0 and 3.29.0.1 releases
from imgthla.
Thanks for the clarification, from release 3.30 onwards, we have changed the methods used to build these files to try and resolve a number of issues, primarily related to the sequence feature co-ordinates. This issue should be resolved in releases 3.30 onwards.
from imgthla.
Ok, thanks. Do you plan to release an updated version of 3.29?
from imgthla.
The individual entry has been updated, but the bug may be seen in other sequences.
from imgthla.
OK. Thank you for your help.
from imgthla.
Related Issues (20)
- About alignment result HOT 1
- DRB3*03:57Q-related issue in the DRB_prot.txt file for releases 3.49.0 to 3.51.0 HOT 1
- Unreachable link in README HOT 1
- Add 3.52.0 release tag, please HOT 1
- Invalid allele name "5N" instead of "50N" IPD-IMGT/HLA Release 3.52.0 HOT 1
- What does the pipe character "|" indicate in the nuc.txt and gen.txt files? HOT 5
- New and changed attributes: releasestatus and releasecomments HOT 2
- HLA-DPB1*1332N exon border change HOT 1
- TCE group assignment for DPB1* 1148:01Q and 1038:01Q HOT 4
- Alignments missing most of sequence HOT 2
- The DPA2 and DPB2 nucleotide alignments include codon numbering but have no cognate peptide alignments HOT 2
- An unexpected change in hla.xml format HOT 3
- 3.54.0 release tag HOT 8
- HLA01143,B*27:18
- Hi.dear
- Release version as JSON and/or XML HOT 4
- Block of allele names with no associated sequences in the HLA-A protein alignment in release 3.55.0 HOT 2
- Discrepancy between TAP2 protein and nucleotide alignments HOT 3
- Discrepancy between the DPA1_prot.txt and DPA1_nuc.txt files for the DPA1*03:05:01Q alleles HOT 4
- The DPA1*01:05 allele is missing from the DPA1 genomic alignment. HOT 3
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from imgthla.